[size=+1]Databases, Web Tools

Three-dimensional structures (coordinates and images)

[size=-1]The Nucleic Acid Database[size=-1](NDB) [size=-1]The Protein Data Bank (PDB) [size=-1]The RiboWeb Project (three-dimensional models of the E. coli 30 S ribosomal subunit and 16 S rRNA) [size=-1]RNase P 3D models[size=-1] [size=-1]IMB Jena Image Library of Biological Macromolecules[size=-1] [size=-1](with a compilation of all RNA structures from the Protein Data Bank) [size=-1]The RNA Structure Database[size=-1] [size=-1]SCOR: Structural Classification of RNA [size=-1]Visualization of Viruses (DNA and RNA)- University of Wisconsin, Madison [size=-1]Ribosome Images (Wadsworth Center Microscope 3D Database) [size=-1]Base pairs [size=-1]Compilation by Tinoco [size=-1]Compilation by Dirheimer et al. [size=-1]Database of non-canonical base pairs found in known RNA structures (Fox Lab) [size=-1]Geometric classification of non-canonical base pairing (Leontis, Westhof)[size=-1] [size=-1]The Base Pair Directory of the IMB Jena Image Library of Biological Macromolecules

Sequences, Secondary structures, Other

[size=-1]5S Ribosomal RNA Database [size=-1]Database of Ribosomal Crosslinks (DRC) [size=-1]Ribosomal Database Project II [size=-1]Ribosomal RNA Mutational Database[size=-1] [size=-1]European Large Subunit Ribosomal RNA Database [size=-1]European Small Subunit Ribosomal RNA Database [size=-1]Ribosomal Internal Spacer Sequence Collection (RISSC) [size=-1]Comparative RNA Web Site[size=-1] [size=-1]Old RNA Secondary Structures Site[size=-1] [size=-1]tRNA and tRNA Gene Sequences [size=-1]GtRDB: The Genomic tRNA Database [url=http://bio-www.ba.cnr.it:8000/BioWWW/#PLMItRNA][size=-1]PLMItRNA: A Database for Plant Mitochondrial tRNA Genes and Molecules[/url][size=-1] [size=-1]Aminoacyl-tRNA Synthetases Database (AARS)   [size=-1]tmRNA Database [size=-1]tmRNA Website [size=-1]RNA Editing Web Site[size=-1] [size=-1]Uridine insertion/deletion RNA Editing Web Site[size=-1] [url=http://bio-www.ba.cnr.it:8000/BioWWW/#UTRdb][size=-1]UTRdb: a database of Untranslated Regions of Eukaryotic mRNAs[/url][size=-1] [size=-1]uRNA Database (uRNADB) [size=-1]Small RNA Database [size=-1]Methylation Guide snoRNA Database[size=-1] [size=-1]Database of Non-Coding RNA [size=-1]Non-Coding RNAs in Plants   [size=-1]Aptamer Database [size=-1]Guide RNA Database [size=-1]Human AU-Rich Element-Containing mRNA Database (ARED) [size=-1]NMD Database[size=-1] (NMD - Nonsense mediated mRNA decay) [size=-1]PseudoBase: A Database with RNA Pseudoknots [size=-1]RECODE - Database of translational recoding events[size=-1] [size=-1]RNA Helicases from Yeast[size=-1] [size=-1]RNA Modification Database[size=-1] [size=-1]RNase P Database [size=-1]RNAi Database[size=-1] [size=-1]Signal Recognition Particle Database[size=-1] [size=-1]Subviral RNA Database [size=-1]YIDB: The Yeast Intron Database

Web Tools

[size=-1]B[size=-1] Java-based, on-line biomolecular modeling package. It should be useful in generating initial structures of biopolymers and small organic molecules. Simple force-field energy minimizations can be carried out in addition to simulated annealing with molecular dynamics. [size=-1]RNAGenie - RNA Gene Prediction[size=-1] Ribosomal Data Project II Online Analyses [size=-1]Extinction Coefficient Calculation for DNA and RNA Oligomers[size=-1] [size=-1]MFOLD WWW server [size=-1]European MFOLD server[size=-1] PatScan[size=-1](PatScan is a pattern matcher which searches protein or nucleotide (DNA, RNA, tRNA etc.) sequence archives for instances of a pattern which you input) [size=-1]Transterm - mRNA analysis server [size=-1]RNA secondary structure prediction server (Moscow State University)[size=-1] [size=-1]tRNAscan SE[size=-1] (search for transfer RNA genes in a genomic sequence) [size=-1]Web interface to the RNAfold program (Vienna package)[size=-1]

呵呵
什么东东